The proto-Nucleic-Acid Builder (pNAB)
PNAB
ConformationSearch
PNAB::ConformationSearch Member List
This is the complete list of members for
PNAB::ConformationSearch
, including all inherited members.
backbone_
PNAB::ConformationSearch
private
backbone_range_
PNAB::ConformationSearch
private
bases_
PNAB::ConformationSearch
private
bu_a_mol
PNAB::ConformationSearch
private
ConformationSearch
(PNAB::RuntimeParameters &runtime_params, PNAB::Backbone &backbone, PNAB::HelicalParameters &helical_params, PNAB::Bases bases, std::string prefix="test", bool verbose=true)
PNAB::ConformationSearch
conv_
PNAB::ConformationSearch
private
coords
PNAB::ConformationSearch
private
GeneticAlgorithmSearch
()
PNAB::ConformationSearch
private
glbl_rot_
PNAB::ConformationSearch
private
glbl_translate_
PNAB::ConformationSearch
private
head
PNAB::ConformationSearch
private
helical_params_
PNAB::ConformationSearch
private
measureDistance
(double *coords, unsigned head, unsigned tail)
PNAB::ConformationSearch
private
monomer_num_coords_
PNAB::ConformationSearch
private
MonteCarloSearch
(bool weighted)
PNAB::ConformationSearch
private
number_of_candidates
PNAB::ConformationSearch
private
output_string
PNAB::ConformationSearch
private
prefix_
PNAB::ConformationSearch
private
printProgress
(std::size_t search_index, std::size_t search_size)
PNAB::ConformationSearch
private
RandomSearch
(bool weighted)
PNAB::ConformationSearch
private
reportData
(PNAB::ConformerData &conf_data)
PNAB::ConformationSearch
private
rl
PNAB::ConformationSearch
private
rng_
PNAB::ConformationSearch
private
rotor_vector
PNAB::ConformationSearch
private
run
()
PNAB::ConformationSearch
runtime_params_
PNAB::ConformationSearch
private
step_rot_
PNAB::ConformationSearch
private
step_translate_
PNAB::ConformationSearch
private
SystematicSearch
()
PNAB::ConformationSearch
private
tail
PNAB::ConformationSearch
private
unit
PNAB::ConformationSearch
private
verbose_
PNAB::ConformationSearch
private
WeightedDistributions
()
PNAB::ConformationSearch
private
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