PNAB::Chain Member List

This is the complete list of members for PNAB::Chain, including all inherited members.

all_angles_	PNAB::Chain	private
all_torsions_	PNAB::Chain	private
build_strand_	PNAB::Chain	private
Chain(PNAB::Bases bases, const PNAB::Backbone &backbone, std::vector< std::string > strand, std::string ff_type, std::array< unsigned, 2 > &range, bool hexad, std::vector< bool > build_strand={true, false, false, false, false, false}, std::vector< bool > strand_orientation={true, true, true, true, true, true}, double glycosidic_bond_distance=0.0)	PNAB::Chain
chain_length_	PNAB::Chain	private
combined_chain_	PNAB::Chain	private
constraintsAng_	PNAB::Chain	private
constraintsBond_	PNAB::Chain	private
constraintsTor_	PNAB::Chain	private
constraintsTot_	PNAB::Chain	private
ff_type_	PNAB::Chain	private
fillConformerEnergyData(double *xyz, PNAB::ConformerData &conf_data, std::vector< double > energy_filter)	PNAB::Chain	private
generateConformerData(double *xyz, PNAB::HelicalParameters &hp, std::vector< double > energy_filter)	PNAB::Chain
glycosidic_bond_distance_	PNAB::Chain	private
hexad_	PNAB::Chain	private
is_fixed_bond	PNAB::Chain	private
isKCAL_	PNAB::Chain	private
monomer_bb_index_range_	PNAB::Chain	private
n_chains_	PNAB::Chain	private
orderResidues(OpenBabel::OBMol *molecule)	PNAB::Chain	private
pFF_	PNAB::Chain	private
setCoordsForChain(double *xyz, double *conf, PNAB::HelicalParameters &hp, std::vector< unsigned > &num_bu_atoms, std::vector< unsigned > &bb_start_index, std::vector< double * > &base_coords_vec, std::vector< unsigned > &deleted_atoms_ids, unsigned chain_index)	PNAB::Chain	private
setupChain(std::vector< PNAB::Base > &strand, OpenBabel::OBMol &chain, std::vector< unsigned > &new_bond_ids, std::vector< unsigned > &deleted_atoms_ids, std::vector< unsigned > &num_base_unit_atoms, std::vector< unsigned > &bb_start_index, std::vector< double * > &base_coords_vec, std::vector< std::vector< unsigned >> &fixed_bonds_vec, const Backbone &backbone, unsigned chain_index)	PNAB::Chain	private
setupFFConstraints(OpenBabel::OBMol &chain, std::vector< unsigned > &new_bond_ids, std::vector< std::vector< unsigned >> &fixed_bonds_vec, unsigned offset=0)	PNAB::Chain	private
strand_orientation_	PNAB::Chain	private
v_base_coords_vec_	PNAB::Chain	private
v_bb_start_index_	PNAB::Chain	private
v_chain_	PNAB::Chain	private
v_deleted_atoms_ids_	PNAB::Chain	private
v_fixed_bonds	PNAB::Chain	private
v_new_bond_ids_	PNAB::Chain	private
v_num_bu_A_mol_atoms_	PNAB::Chain	private
~Chain()	PNAB::Chain	inline